75. Morel Y, Hegdekar N, Sarkar C, Lipinski MM, Kane MA, Jones JW. Structure-specific, accurate quantitation of plasmalogen glycerophosphoethanolamine. Analytica Chimica Acta, Volume 1186, 2021, 339088, ISSN 0003-2670, doi: 10.1016/j.aca.2021.339088.

74. Muller L, Huang W, Jones JW, Farese AM, MacVittie TJ, Kane MA. Complementary Lipidomic, Proteomic, and Mass Spectrometry Imaging Approach to the Characterization of the Acute Effects of Radiation in the Non-human Primate Mesenteric Lymph Node after Partial-body Irradiation with Minimal Bone Marrow Sparing. Health Phys. 2021 Oct 1;121(4):372-383. doi: 10.1097/HP.0000000000001470. PMID: 34546218.

73. Carballal S, Vitvitsky V, Kumar R, Hanna DA, Libiad M, Gupta A, Jones JW, Banerjee R. Hydrogen sulfide stimulates lipid biogenesis from glutamine that is dependent on the mitochondrial NAD(P)H pool. J Biol Chem. 2021 Aug;297(2):100950. doi: 10.1016/j.jbc.2021.100950. Epub 2021 Jul 10. PubMed PMID: 34252456; PubMed Central PMCID: PMC8342795.

72. Tran A, Monreal IA, Moskovets E, Aguilar HC, Jones JW. Rapid Detection of Viral Envelope Lipids Using Lithium Adducts and AP-MALDI High-Resolution Mass Spectrometry. J Am Soc Mass Spectrom. 2021 Apr 22;. doi: 10.1021/jasms.1c00058. PubMed PMID: 33886294.

71. Yang N, Parker LE, Yu J, Jones JW, Liu T, Papanicolaou KN, Talbot CC Jr, Margulies KB, O’Rourke B, Kane MA, Foster DB. Cardiac retinoic acid levels decline in heart failure. JCI Insight. 2021 Apr 22;6(8). doi: 10.1172/jci.insight.137593. PubMed PMID: 33724958

70. Srikanth MP, Jones JW, Kane M, Awad O, Park TS, Zambidis ET, Feldman RA. Elevated glucosylsphingosine in Gaucher disease induced pluripotent stem cell neurons deregulates lysosomal compartment through mammalian target of rapamycin complex 1. Stem Cells Transl Med. 2021 Mar 3;. doi: 10.1002/sctm.20-0386. PubMed PMID: 33656802.


69. Tran A, Wan L, Xu Z, Haro JM, Li B, Jones JW. Lithium Hydroxide Hydrolysis Combined with MALDI TOF Mass Spectrometry for Rapid Sphingolipid Detection. J Am Soc Mass Spectrom. 2020 Oct 30;. doi: 10.1021/jasms.0c00322. [Epub ahead of print] PubMed PMID: 33124427.

68. Li L, Wang H, Jones JW. Sphingolipid metabolism as a marker of hepatotoxicity in drug-induced liver injury. Prostaglandins Other Lipid Mediat. 2020 Sep 30;151:106484. doi: 10.1016/j.prostaglandins.2020.106484. [Epub ahead of print] PubMed PMID: 33007444.

67. Shiffka SJ, Jones JW, Li L, Farese AM, MacVittie TJ, Wang H, Swaan PW, Kane MA. Quantification of common and planar bile acids in tissues and cultured cells. J Lipid Res. 2020 Nov;61(11):1524-1535. doi: 10.1194/jlr.D120000726. Epub 2020 Jul 22. PubMed PMID: 32718973; PubMed Central PMCID: PMC7604731.

66. Chandler CE, Harberts EM, Pelletier MR, Thaipisuttikul I, Jones JW, Hajjar AM, Sahl JW, Goodlett DR, Pride AC, Rasko DA, Trent MS, Bishop RE, Ernst RK. Early evolutionary loss of the lipid A modifying enzyme PagP resulting in innate immune evasion in Yersinia pestis. Proc Natl Acad Sci U S A. 2020 Sep 15;117(37):22984-22991. doi: 10.1073/pnas.1917504117. Epub 2020 Aug 31. PubMed PMID: 32868431; PubMed Central PMCID: PMC7502761.

65. Olwenyi OA, Acharya A, Routhu NK, Pierzchalski K, Jones JW, Kane MA, Sidell N, Mohan M, Byrareddy SN. Retinoic Acid Improves the Recovery of Replication-Competent Virus from Latent SIV Infected Cells. Cells. 2020 Sep 11;9(9). doi: 10.3390/cells9092076. PubMed PMID: 32932813; PubMed Central PMCID: PMC7565696.

64. Stefanak MP, Al-Mudares F, El-Metwally D, Jones JW, Kane MA, Bearer CF. High concentrations of urinary ethanol metabolites in neonatal intensive care unit infants. Pediatr Res. 2020 Jun 20;. doi: 10.1038/s41390-020-1020-5. [Epub ahead of print] PubMed PMID: 32563185.

63. Sarkar C, Jones JW, Hegdekar N, Thayer JA, Kumar A, Faden AI, Kane MA, Lipinski MM. PLA2G4A/cPLA2-mediated lysosomal membrane damage leads to inhibition of autophagy and neurodegeneration after brain trauma. Autophagy. 2020 Mar;16(3):466-485. doi: 10.1080/15548627.2019.1628538. Epub 2019 Jun 25. PubMed PMID: 31238788; PubMed Central PMCID: PMC6999646.

62. Brewer LK, Jones JW, Blackwood CB, Barbier M, Oglesby-Sherrouse A, Kane MA. Development and bioanalytical method validation of an LC-MS/MS assay for simultaneous quantitation of 2-alkyl-4(1H)-quinolones for application in bacterial cell culture and lung tissue. Anal Bioanal Chem. 2020 Mar;412(7):1521-1534. doi: 10.1007/s00216-019-02374-0. Epub 2020 Jan 29. PubMed PMID: 31993728; PubMed Central PMCID: PMC7223165.

61. Rajakumar A, Kane MA, Yu J, Jones JW, Qu H, Badell M, Taylor RN, Sidell N. Alternatively Activated Macrophages Are the Primary Retinoic Acid-Producing Cells in Human Decidua. Reprod Sci. 2020 Jan;27(1):334-341. doi: 10.1007/s43032-019-00030-7. Epub 2020 Jan 1. PubMed PMID: 32046391; PubMed Central PMCID: PMC7539807.


60. Liu T, Kotha RR, Jones JW, Polli JE, Kane MA. Fast liquid chromatography-tandem mass spectrometry method for simultaneous determination of eight antiepileptic drugs and an active metabolite in human plasma using polarity switching and timed selected reaction monitoring. J Pharm Biomed Anal. 2019 Nov 30;176:112816. doi: 10.1016/j.jpba.2019.112816. Epub 2019 Aug 17. PubMed PMID: 31465890.

59. Li Y, Jones JW, M C Choi H, Sarkar C, Kane MA, Koh EY, Lipinski MM, Wu J. cPLA2 activation contributes to lysosomal defects leading to impairment of autophagy after spinal cord injury. Cell Death Dis. 2019 Jul 11;10(7):531. doi: 10.1038/s41419-019-1764-1. PubMed PMID: 31296844; PubMed Central PMCID: PMC6624263.

58. Kim D, Chen R, Sheu M, Kim N, Kim S, Islam N, Wier EM, Wang G, Li A, Park A, Son W, Evans B, Yu V, Prizmic VP, Oh E, Wang Z, Yu J, Huang W, Archer NK, Hu Z, Clemetson N, Nelson AM, Chien A, Okoye GA, Miller LS, Ghiaur G, Kang S, Jones JW, Kane MA, Garza LA. Noncoding dsRNA induces retinoic acid synthesis to stimulate hair follicle regeneration via TLR3. Nat Commun. 2019 Jun 26;10(1):2811. doi: 10.1038/s41467-019-10811-y. PubMed PMID: 31243280; PubMed Central PMCID: PMC6594970.

57. Deepak V, Sahu MB, Yu J, Jones JW, Kane MA, Taylor RN, Badell ML, Sidell N, Rajakumar A. Retinoic Acid Is a Negative Regulator of sFLT1 Expression in Decidual Stromal Cells, and Its Levels Are Reduced in Preeclamptic Decidua. Hypertension. 2019 Mar 18:HYPERTENSIONAHA11812564. doi: 10.1161/HYPERTENSIONAHA.118.12564. PMID: 30879360.

56. Jones JW, Sarkar C, Lipinski MM, Kane MA. Detection and Structural Characterization of Ether Glycerophosphoethanolamine from Cortical Lysosomes Following Traumatic Brain Injury Using UPLC-HDMSE. Proteomics. 2019 Sep;19(18):e1800297. doi: 10.1002/pmic.201800297. Epub 2019 Mar 19. PubMed PMID: 30790445; PubMed Central PMCID: PMC7565256.

55. Jones JW, Alloush J, Sellamuthu R, Chua HL, MacVittie TJ, Orschell CM, Kane MA. Effect of Sex on Biomarker Response in a Mouse Model of the Hematopoietic Acute Radiation Syndrome. Health Phys. 2019 Apr;116(4):484-502. doi: 10.1097/HP.0000000000000961. PMID: 30681425.

54. Carter CL, Hankey KG, Booth C, Tudor GL, Parker GA, Jones JW, Farese AM, MacVittie TJ, Kane MA. Characterizing the Natural History of Acute Radiation Syndrome of the Gastrointestinal Tract: Combining High Mass and Spatial Resolution Using MALDI-FTICR-MSI. Health Phys. 2019 Apr;116(4):454-472. doi: 10.1097/HP.0000000000000948. PMID: 30681424.

53. Huang W, Yu J, Jones JW, Carter CL, Jackson IL, Vujaskovic Z, MacVittie TJ, Kane MA.Acute Proteomic Changes in the Lung After WTLI in a Mouse Model: Identification of Potential Initiating Events for Delayed Effects of Acute Radiation Exposure. Health Phys. 2019 Apr;116(4):503-515. doi: 10.1097/HP.0000000000000956. PMID: 30652977.

52. Huang W, Yu J, Jones JW, Carter CL, Pierzchalski K, Tudor G, Booth C, MacVittie TJ, Kane MA. Proteomic Evaluation of the Acute Radiation Syndrome of the Gastrointestinal Tract in a Murine Total-body Irradiation Model. Health Phys. 2019 Apr;116(4):516-528. doi: 10.1097/HP.0000000000000951. PMID: 30624357.

51. Jones JW, Clifford Z, Li F, Tudor GL, Farese AM, Booth C, MacVittie TJ, Kane MA.Targeted Metabolomics Reveals Metabolomic Signatures Correlating Gastrointestinal Tissue to Plasma in a Mouse Total-body Irradiation Model. Health Phys. 2019 Apr;116(4):473-483. doi: 10.1097/HP.0000000000000955. PMID: 30624349.

50. Cohen EP, Hankey KG, Farese AM, Parker GA, Jones JW, Kane MA, Bennett A, MacVittie TJ. Radiation Nephropathy in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing-Part 1: Acute and Chronic Kidney Injury and the Influence of Neupogen. Health Phys. 2019 Mar;116(3):401-408. doi: 10.1097/HP.0000000000000960. PMID: 30608245.

49. Bakhireva LN, Kane MA, Bearer CF, Bautista A, Jones JW, Garrison L, Begay MG, Ozechowski T, Lewis J. Prenatal alcohol exposure prevalence as measured by direct ethanol metabolites in meconium in a Native American tribe of the southwest. Birth Defects Res. 2019 Jan 15;111(2):53-61. doi: 10.1002/bdr2.1427. Epub 2018 Dec 14. PMID: 30549447.


48. Teletin M, Vernet N, Yu J, Klopfenstein M, Jones JW, Féret B, Kane MA, Ghyselinck NB, Mark M. Two functionally redundant sources of retinoic acid secure spermatogonia differentiation in the seminiferous epithelium. Development. 2019 Jan 4;146(1). pii: dev170225. doi: 10.1242/dev.170225. PMID: 30487180.

47. Wang S, Yu J, Jones JW, Pierzchalski K, Kane MA, Trainor PA, Xavier-Neto J, Moise AR. Retinoic acid signaling promotes the cytoskeletal rearrangement of embryonic epicardial cells. FASEB J. 2018 Feb 15:fj201701038R. doi: 10.1096/fj.201701038R. PubMed PMID: 29447006.

46. Handberg-Thorsager M, Gutierrez-Mazariegos J, Arold ST, Kumar Nadendla E, Bertucci PY, Germain P, Tomançak P, Pierzchalski K, Jones JW, Albalat R, Kane MA, Bourguet W, Laudet V, Arendt D, Schubert M. The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation. Sci Adv. 2018 Feb 21;4(2):eaao1261. doi: 10.1126/sciadv.aao1261. PubMed PMID: 29492455; PubMed Central PMCID: PMC5821490.

45. Collier AF, Gumerson J, Lehtimäki K, Puoliväli J, Jones JW, Kane MA, Manne S, O’Neill A, Windish HP, Ahtoniemi T, Williams BA, Albrecht DE, Bloch RJ. Effect of Ibuprofen on Skeletal Muscle of Dysferlin-Null Mice. J Pharmacol Exp Ther. 2018 Mar;364(3):409-419. doi: 10.1124/jpet.117.244244. PubMed PMID: 29284661; PubMed Central PMCID: PMC5801553.

44. Huang W, Brewer LK, Jones JW, Nguyen AT, Marcu A, Wishart DS, Oglesby-Sherrouse AG, Kane MA, Wilks A. PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database. Nucleic Acids Res. 2018 Jan 4;46(D1):D575-D580. doi: 10.1093/nar/gkx1061. PubMed PMID: 29106626; PubMed Central PMCID: PMC5753269.


43. Jones JW, Jackson IL, Vujaskovic Z, Kaytor MD, Kane MA. Targeted Metabolomics Identifies Pharmacodynamic Biomarkers for BIO 300 Mitigation of Radiation-Induced Lung Injury. Pharm Res. 2017 Dec;34(12):2698-2709. doi: 10.1007/s11095-017-2200-9. PubMed PMID: 28971289.

42. Carter CL, Jones JW, Farese AM, MacVittie TJ, Kane MA. Lipidomic dysregulation within the lung parenchyma following whole-thorax lung irradiation: Markers of injury, inflammation and fibrosis detected by MALDI-MSI. Sci Rep. 2017 Sep 4;7(1):10343. doi: 10.1038/s41598-017-10396-w. PubMed PMID: 28871103; PubMed Central PMCID: PMC5583385.

41. Mackowiak B, Li L, Welch MA, Li D, Jones JW, Heyward S, Kane MA, Swaan PW, Wang H. Molecular Basis of Metabolism-Mediated Conversion of PK11195 from an Antagonist to an Agonist of the Constitutive Androstane Receptor. Mol Pharmacol. 2017 Jul;92(1):75-87. doi: 10.1124/mol.117.108621. PubMed PMID: 28442602; PubMed Central PMCID: PMC5452073.

40. Reinhart AA, Nguyen AT, Brewer LK, Bevere J, Jones JW, Kane MA, Damron FH, Barbier M, Oglesby-Sherrouse AG. The Pseudomonas aeruginosa PrrF Small RNAs Regulate Iron Homeostasis during Acute Murine Lung Infection. Infect Immun. 2017 Apr 21;85(5). pii: e00764-16. doi: 10.1128/IAI.00764-16. PubMed PMID: 28289146; PubMed Central PMCID: PMC5400841.

39. Jones JW, Carter CL, Li F, Yu J, Pierzchalski K, Jackson IL, Vujaskovic Z, Kane MA. Ultraperformance convergence chromatography-high resolution tandem mass spectrometry for lipid biomarker profiling and identification. Biomed Chromatogr. 2017 Mar;31(3). doi: 10.1002/bmc.3822. PubMed PMID: 27557409; PubMed Central PMCID: PMC5359636.


38. Byrareddy SN, Arthos J, Cicala C, Villinger F, Ortiz KT, Little D, Sidell N, Kane MA, Yu J, Jones JW, Santangelo PJ, Zurla C, McKinnon LR, Arnold KB, Woody CE, Walter L, Roos C, Noll A, Van Ryk D, Jelicic K, Cimbro R, Gumber S, Reid MD, Adsay V, Amancha PK, Mayne AE, Parslow TG, Fauci AS, Ansari AA. Sustained virologic control in SIV+ macaques after antiretroviral and α4β7 antibody therapy. Science. 2016 Oct 14;354(6309):197-202. PubMed PMID: 27738167; PubMed Central PMCID: PMC5405455.

37. Kelly KK, MacPherson AM, Grewal H, Strnad F, Jones JW, Yu J, Pierzchalski K, Kane MA, Herson PS, Siegenthaler JA. Col1a1+ perivascular cells in the brain are a source of retinoic acid following stroke. BMC Neurosci. 2016 Jul 15;17(1):49. doi: 10.1186/s12868-016-0284-5. PubMed PMID: 27422020; PubMed Central PMCID: PMC4947279.

36. Bansal N, Bosch A, Leibovitch B, Pereira L, Cubedo E, Yu J, Pierzchalski K, Jones JW, Fishel M, Kane M, Zelent A, Waxman S, Farias E. Blocking the PAH2 domain of Sin3A inhibits tumorigenesis and confers retinoid sensitivity in triple negative breast cancer. Oncotarget. 2016 Jul 12;7(28):43689-43702. doi: 10.18632/oncotarget.9905. PubMed PMID: 27286261; PubMed Central PMCID: PMC5190053.

35. Carter CL, Jones JW, Farese AM, MacVittie TJ, Kane MA. Inflation-Fixation Method for Lipidomic Mapping of Lung Biopsies by Matrix Assisted Laser Desorption/Ionization-Mass Spectrometry Imaging. Anal Chem. 2016 May 3;88(9):4788-94. doi: 10.1021/acs.analchem.6b00165. PubMed PMID: 27028398.

34. Futrega K, Yu J, Jones JW, Kane MA, Lott WB, Atkinson K, Doran MR. Polydimethylsiloxane (PDMS) modulates CD38 expression, absorbs retinoic acid and may perturb retinoid signalling. Lab Chip. 2016 Apr 21;16(8):1473-83. doi: 10.1039/c6lc00269b. PubMed PMID: 27008339.

33. Nguyen AT, Jones JW, Cámara M, Williams P, Kane MA, Oglesby-Sherrouse AG. Cystic Fibrosis Isolates of Pseudomonas aeruginosa Retain Iron-Regulated Antimicrobial Activity against Staphylococcus aureus through the Action of Multiple Alkylquinolones. Front Microbiol. 2016 Jul 27;7:1171. doi: 10.3389/fmicb.2016.01171. PubMed PMID: 27512392; PubMed Central PMCID: PMC4961689.


32. Jones JW, Thompson CJ, Carter CL, Kane MA. Electron-induced dissociation (EID) for structure characterization of glycerophosphatidylcholine: determination of double-bond positions and localization of acyl chains. J Mass Spectrom. 2015 Dec;50(12):1327-39. doi: 10.1002/jms.3698. PubMed PMID: 26634966; PubMed Central PMCID: PMC4745129.

31. Hittle LE, Powell DA, Jones JW, Tofigh M, Goodlett DR, Moskowitz SM, Ernst RK. Site-specific activity of the acyltransferases HtrB1 and HtrB2 in Pseudomonas aeruginosa lipid A biosynthesis. Pathog Dis. 2015 Nov;73(8):ftv053. doi: 10.1093/femspd/ftv053. PubMed PMID: 26223882; PubMed Central PMCID: PMC4626592.

30. Jones JW, Bennett A, Carter CL, Tudor G, Hankey KG, Farese AM, Booth C, MacVittie TJ, Kane MA. Citrulline as a Biomarker in the Non-human Primate Total- and Partial-body Irradiation Models: Correlation of Circulating Citrulline to Acute and Prolonged Gastrointestinal Injury. Health Phys. 2015 Nov;109(5):440-51. doi: 10.1097/HP.0000000000000347. PubMed PMID: 26425904; PubMed Central PMCID: PMC4593331.

29. Jones JW, Tudor G, Li F, Tong Y, Katz B, Farese AM, MacVittie TJ, Booth C, Kane MA. Citrulline as a Biomarker in the Murine Total-Body Irradiation Model: Correlation of Circulating and Tissue Citrulline to Small Intestine Epithelial Histopathology. Health Phys. 2015 Nov;109(5):452-65. doi: 10.1097/HP.0000000000000346. PubMed PMID: 26425905; PubMed Central PMCID: PMC4727745.

28. Carter CL, Jones JW, Barrow K, Kieta K, Taylor-Howell C, Kearney S, Smith CP, Gibbs A, Farese AM, MacVittie TJ, Kane MA. A MALDI-MSI Approach to the Characterization of Radiation-Induced Lung Injury and Medical Countermeasure Development. Health Phys. 2015 Nov;109(5):466-78. doi: 10.1097/HP.0000000000000353. PubMed PMID: 26425906; PubMed Central PMCID: PMC4745118.

27. Ting TY, Jiang W, Lionberger R, Wong J, Jones JW, Kane MA, Krumholz A, Temple R, Polli JE. Generic lamotrigine versus brand-name Lamictal bioequivalence in patients with epilepsy: A field test of the FDA bioequivalence standard. Epilepsia. 2015 Sep;56(9):1415-24. doi: 10.1111/epi.13095. PubMed PMID: 26201987.

26. Nguyen AT, Jones JW, Ruge MA, Kane MA, Oglesby-Sherrouse AG. Iron Depletion Enhances Production of Antimicrobials by Pseudomonas aeruginosa. J Bacteriol. 2015 Jul;197(14):2265-75. doi: 10.1128/JB.00072-15. PubMed PMID: 25917911; PubMed Central PMCID: PMC4524187.

25. Alonso S, Su M, Jones JW, Ganguly S, Kane MA, Jones RJ, Ghiaur G. Human bone marrow niche chemoprotection mediated by cytochrome P450 enzymes. Oncotarget. 2015 Jun 20;6(17):14905-12. PubMed PMID: 25915157; PubMed Central PMCID: PMC4558124

24. Wehman B, Dawood M, Ghoreishi M, Cheema F, Jones JW, Kane MA, Ward CW, Gammie JS. Surgical Management of Caseous Calcification of the Mitral Annulus. Ann Thorac Surg. 2015 Jun;99(6):2231-3. doi: 10.1016/j.athoracsur.2015.02.106. PubMed PMID: 26046892

23. Wong JM, Jones JW, Jiang W, Polli JE, Kane MA. Quantification of lamotrigine in patient plasma using a fast liquid chromatography-tandem mass spectrometry method with backflush technology. Ther Drug Monit. 2015 Apr;37(2):188-97. doi: 10.1097/FTD.0000000000000123. PubMed PMID: 25162213

22. Jones JW, Pierzchalski K, Yu J, Kane MA. Use of fast HPLC multiple reaction monitoring cubed for endogenous retinoic acid quantification in complex matrices. Anal Chem. 2015 Mar 17;87(6):3222-30. doi: 10.1021/ac504597q. PubMed PMID: 25704261

21. Hittle LE, Jones JW, Hajjar AM, Ernst RK, Preston A. Bordetella parapertussis PagP mediates the addition of two palmitates to the lipopolysaccharide lipid A. J Bacteriol. 2015 Feb;197(3):572-80. doi: 10.1128/JB.02236-14. PubMed PMID: 25422302; PubMed Central PMCID: PMC4285993

20. Su M, Alonso S, Jones JW, Yu J, Kane MA, Jones RJ, Ghiaur G. All-Trans Retinoic Acid Activity in Acute Myeloid Leukemia: Role of Cytochrome P450 Enzyme Expression by the Microenvironment. PLoS One. 2015 Jun 5;10(6):e0127790. doi: 10.1371/journal.pone.0127790. PubMed PMID: 26047326; PubMed Central PMCID: PMC4457893.


19. Minakata D, Mezyk SP, Jones JW, Daws BR, Crittenden JC. Development of linear free energy relationships for aqueous phase radical-involved chemical reactions. Environ Sci Technol. 2014 Dec 2;48(23):13925-32. PubMed PMID: 25368975.

18. Tang N, Bamford P, Jones J, He M, Kane MA, Mooney SM, Bearer CF. Choline partially prevents the impact of ethanol on the lipid raft dependent functions of l1 cell adhesion molecule. Alcohol Clin Exp Res. 2014 Nov;38(11):2722-30. doi: 10.1111/acer.12554. PubMed PMID: 25421509; PubMed Central PMCID: PMC4244605.

17. Gutierrez-Mazariegos J, Nadendla EK, Lima D, Pierzchalski K, Jones JW, Kane M, Nishikawa J, Hiromori Y, Nakanishi T, Santos MM, Castro LF, Bourguet W, Schubert M, Laudet V. A mollusk retinoic acid receptor (RAR) ortholog sheds light on the evolution of ligand binding. Endocrinology. 2014 Nov;155(11):4275-86. doi: 10.1210/en.2014-1181. PubMed PMID: 25116705; PubMed Central PMCID: PMC4197984.

16. Pierzchalski K, Taylor RN, Nezhat C, Jones JW, Napoli JL, Yang G, Kane MA, Sidell N. Retinoic acid biosynthesis is impaired in human and murine endometriosis. Biol Reprod. 2014 Oct;91(4):84. doi: 10.1095/biolreprod.114.119677. PubMed PMID: 25143356; PubMed Central PMCID: PMC4435029.

15. Jones JW, Tudor G, Bennett A, Farese AM, Moroni M, Booth C, MacVittie TJ, Kane MA. Development and validation of a LC-MS/MS assay for quantitation of plasma citrulline for application to animal models of the acute radiation syndrome across multiple species. Anal Bioanal Chem. 2014 Jul;406(19):4663-75. doi: 10.1007/s00216-014-7870-0. PubMed PMID: 24842404.

14. Jones JW, Scott AJ, Tudor G, Xu PT, Jackson IL, Vujaskovic Z, Booth C, MacVittie TJ, Ernst RK, Kane MA. Identification and quantitation of biomarkers for radiation-induced injury via mass spectrometry. Health Phys. 2014 Jan;106(1):106-19. doi: 10.1097/HP.0b013e3182a4ed3b. PubMed PMID: 24276554; PubMed Central PMCID: PMC3843144.

13. Scott AJ, Jones JW, Orschell CM, MacVittie TJ, Kane MA, Ernst RK. Mass spectrometry imaging enriches biomarker discovery approaches with candidate mapping. Health Phys. 2014 Jan;106(1):120-8. doi: 10.1097/HP.0b013e3182a4ec2f. PubMed PMID: 24276555; PubMed Central PMCID: PMC4015108.


12. Pelletier MR, Casella LG, Jones JW, Adams MD, Zurawski DV, Hazlett KR, Doi Y, Ernst RK. Unique structural modifications are present in the lipopolysaccharide from colistin-resistant strains of Acinetobacter baumannii. Antimicrob Agents Chemother. 2013 Oct;57(10):4831-40. doi: 10.1128/AAC.00865-13. PubMed PMID: 23877686; PubMed Central PMCID: PMC3811424.

11. Healy JR, Bezawada P, Shim J, Jones JW, Kane MA, MacKerell AD Jr, Coop A, Matsumoto RR. Synthesis, modeling, and pharmacological evaluation of UMB 425, a mixed μ agonist/δ antagonist opioid analgesic with reduced tolerance liabilities. ACS Chem Neurosci. 2013 Sep 18;4(9):1256-66. doi: 10.1021/cn4000428. PubMed PMID: 23713721; PubMed Central PMCID: PMC3778426.

10. Wang H, Chauhan J, Hu A, Pendleton K, Yap JL, Sabato PE, Jones JW, Perri M, Yu J, Cione E, Kane MA, Fletcher S, Prochownik EV. Disruption of Myc-Max heterodimerization with improved cell-penetrating analogs of the small molecule 10074-G5. Oncotarget. 2013 Jun;4(6):936-47. PubMed PMID: 23801058; PubMed Central PMCID: PMC3757250.


9. MacArthur I, Jones JW, Goodlett DR, Ernst RK, Preston A. Role of pagL and lpxO in Bordetella bronchiseptica lipid A biosynthesis. J Bacteriol. 2011 Sep;193(18):4726-35. doi: 10.1128/JB.01502-10. PubMed PMID: 21764941; PubMed Central PMCID: PMC3165656.

8. Ting YS, Shaffer SA, Jones JW, Ng WV, Ernst RK, Goodlett DR. Automated lipid A structure assignment from hierarchical tandem mass spectrometry data. J Am Soc Mass Spectrom. 2011 May;22(5):856-66. doi: 10.1007/s13361-010-0055-y. PubMed PMID: 21472520.


7. Jones JW, Cohen IE, Tureĉek F, Goodlett DR, Ernst RK. Comprehensive structure characterization of lipid A extracted from Yersinia pestis for determination of its phosphorylation configuration. J Am Soc Mass Spectrom. 2010 May;21(5):785-99. doi: 10.1016/j.jasms.2010.01.008. PubMed PMID: 20185334.


6. Coats SR, Jones JW, Do CT, Braham PH, Bainbridge BW, To TT, Goodlett DR, Ernst RK, Darveau RP. Human Toll-like receptor 4 responses to P. gingivalis are regulated by lipid A 1- and 4′-phosphatase activities. Cell Microbiol. 2009 Nov;11(11):1587-99. doi: 10.1111/j.1462-5822.2009.01349.x. PubMed PMID: 19552698; PubMed Central PMCID: PMC3074576.

5. Turecek F, Jones JW, Holm AI, Panja S, Nielsen SB, Hvelplund P. Transition metals as electron traps. I. Structures, energetics, electron capture, and electron-transfer-induced dissociations of ternary copper-peptide complexes in the gas phase. J Mass Spectrom. 2009 May;44(5):707-24. doi: 10.1002/jms.1546. PubMed PMID: 19132713.


4. Turecek F, Jones JW, Towle T, Panja S, Nielsen SB, Hvelplund P, Paizs B. Hidden histidine radical rearrangements upon electron transfer to gas-phase peptide ions. Experimental evidence and theoretical analysis. J Am Chem Soc. 2008 Nov 5;130(44):14584-96. doi: 10.1021/ja8036367. PubMed PMID: 18847261.

3. Jones JW, Shaffer SA, Ernst RK, Goodlett DR, Turecek F. Determination of pyrophosphorylated forms of lipid A in Gram-negative bacteria using a multivaried mass spectrometric approach. Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12742-7. doi: 10.1073/pnas.0800445105. PubMed PMID: 18753624; PubMed Central PMCID: PMC2529124.


2. Jones JW, Sasaki T, Goodlett DR, Turecek F. Electron capture in spin-trap capped peptides. An experimental example of ergodic dissociation in peptide cation-radicals. J Am Soc Mass Spectrom. 2007 Mar;18(3):432-44. PubMed PMID: 17112737.


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